Some softwares that have been developed

DNA-BAR -- Distinguisher Selection for Robust DNA Barcoding (developed in collaboration with Prof. Ion Mandoiu and his group from University of Connecticut)
- Some related papers of us that explain key concepts
  
  These files are in pdf format. They can be read via the free acrobat reader software. If you do not have this software installed already in your system, you can download it free from the Adobe Acrobat website.
  
  Piotr Berman, Bhaskar DasGupta and Ming-Yang Kao, Tight Approximability Results for Test Set Problems in Bioinformatics, Journal of Computer & System Sciences, Vol. 71, Issue 2, pp. 145-162, August 2005.
  
  Bhaskar DasGupta, Kishori Konwar, Ion Mandoiu and Alex Shvartsman, Highly Scalable Algorithms for Robust String Barcoding, International Journal of Bioinformatics Research & Applications, Volume 1, No. 2, pp. 145-161, 2005.
  
  Bhaskar DasGupta, Kishori Konwar, Ion Mandoiu and Alex Shvartsman, DNA-BAR: Distinguisher Selection for DNA Barcoding, Bioinformatics (applications note), Vol. 21, No. 16, pp. 3424-2426, 2005.
  
  Bhaskar DasGupta, Kishori Konwar, Ion Mandoiu and Alex Shvartsman, Highly Scalable Algorithms for Robust String Barcoding, 2005 International Workshop on Bioinformatics Research and Applications (IWBRA), LNCS 3515, Vaidy S. Sunderam, Geert Dick van Albada, Peter M. A. Sloot, et al. (editors), Springer Verlag, pp. 1020-1028, May 2005.
Software for decomposing a biological network into monotone subsystems (developed in collaboration with Prof. Eduardo Sontag and his group from Rutgers University)
NET-SYNTHESIS: Software for synthesis of a biological signal trasduction network from indirect experimental evidences
CPalign: Software and web server for topology independent protein structural alignment (developed by Prof. Jie Liang and his group at UIC in collaboration)