(r52) LectureNotes < CS111GreenFA17

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---+ CS 111 Green Lecture Notes and other info

| Week | Date | Lecture/Lab Topic | Reading (to do _before_ meeting) | Lecture Notes |
| 1 | 8/28 | First Lab! | | |
| | 8/29 | | [[https://openstax.org/details/books/concepts-biology][CoB]] 1.1, 2.3<br /> <div dir="ltr"> </div> | [[%ATTACHURL%/Lec01Green_Introduction.pdf][Lec01Green_Introduction.pdf]] |
| | 8/31 | Intro to DNA | [[https://openstax.org/details/books/concepts-biology][CoB]] 9.1, (optional 8.1); <a href="https://learn.zybooks.com/zybook/UICCS111Fall2017" target="_blank">Zybook</a> 1.1-1.5, 1.7 | [[%ATTACHURL%/Lec02GreenPIandCSandDNA.220ppiPix.pdf][Lec02GreenPIandCSandDNA.220ppiPix.pdf]] |
| 2 | 9/4 | No Lab: Labor Day | | |
| | 9/5 | Intro to variables, strings, and functions; intro to genomics and sequencing | [[https://openstax.org/details/books/concepts-biology][CoB]] p236-239 (beginning of 10.3); <a href="https://learn.zybooks.com/zybook/UICCS111Fall2017" target="_blank">Zybook</a>: Rest of Ch. 1, 2.1-2.2, 3.1, 6.1-6.2. (Do Challenge activities _only_ for 2.1-2.2) | [[%ATTACHURL%/Lec03Python_sequencing.pdf][Lec03Python_sequencing.pdf]] |
| | 9/7 | Strings, types, functions. Genbank. | [[https://openstax.org/details/books/concepts-biology][CoB]] 9.2(pp. 204-206), 9.3, 9.4. <a href="https://learn.zybooks.com/zybook/UICCS111Fall2017" target="_blank">Zybook</a> 2.3-2.4, 2.6. | [[%ATTACHURL%/Lecture04.pdf][Lecture04.pdf]] |
| 3 | 9/11 | Lab! First Lab Quiz. Using Genbank & DNA sequences | | |
| | 9/12 | | [[https://learn.zybooks.com/zybook/UICCS111Fall2017][Zybook]]: 7.1; 3.2; go back and do 6.1 Challenge activities (they're short and easy) | [[%ATTACHURL%/Lecture5Complete.pdf][Lecture5Complete.pdf]] |
| | 9/14 | Central dogma of molecular biology; branching (if) and return values from functions; proteins if time | [[https://learn.zybooks.com/zybook/UICCS111Fall2017][ Zybook]], 4.1-4.3, 6.3; Review [[https://openstax.org/details/books/concepts-biology][CoB]] 9.2(pp. 204-206), 9.3, 9.4 | [[%ATTACHURLPATH%/Lec06.pdf][Lec06.pdf]] |
| 4 | 9/18 | Lab | | |
| | 9/19 | Genomics & metabolism; conditional statements | Review [[https://learn.zybooks.com/zybook/UICCS111Fall2017][Zybook]], 4.1-4.3; [[https://openstax.org/details/books/concepts-biology][CoB]] 6.1, 4.1 | [[%ATTACHURLPATH%/Lec07.pdf][Lec07.pdf]] |
| | 9/21 | Branching continued; why we use functions; first look at loops | [[https://learn.zybooks.com/zybook/UICCS111Fall2017][Zybook]] 4.4-4.6 (in 4.5 skip both any question mentioning dictionaries and challenge activity), 5.1, 5.5 (do Challenge 5.5.1 but not 5.5.2), 6.5 | [[%ATTACHURL%/CS111GreenLec08Sep2017.pdf][CS111GreenLec08Sep2017.pdf]] |
| 5 | 9/25 | | | |
| | 9/26 | Review for 1st Midterm | | [[%ATTACHURL%/Lec9Green-Exam1Review.pdf][Lec9Green-Exam1Review.pdf]] |
| | 9/28 | First Midterm | | |
| 6 | 10/2 | Lab | | |
| | 10/3 | First loops, more on parameter passing, start gene finding | If you have time: [[https://learn.zybooks.com/zybook/UICCS111Fall2017][Zybook]] 5.5 (review), 5.6, 6.6 | [[%ATTACHURL%/Lec11CS111Green.pdf][Lec11CS111Green.pdf]] |
| | 10/5 | | [[https://learn.zybooks.com/zybook/UICCS111Fall2017][Zybook]] 5.6, 6.6, 5.2-5.4, 12.1-12.2; [[https://openstax.org/details/books/concepts-biology][CoB]] 9.5, Ch. 13 pp 295-297 | <p> [[%ATTACHURLPATH%/Lec12cs.pdf][<br />Lec12cs.pdf]]</p> <p> [[%ATTACHURLPATH%/Lec12bio.pdf][Lec12bio.pdf]]</p> |
| 7 | 10/9 | Lab: Files, first piece of first project | | |
| | 10/10 | <p>Loops (Molecular comparisons), with a focus on while.</p> <p>First project out!</p> | [[https://openstax.org/details/books/concepts-biology][CoB]] Section 12.2 paragraph on Molecular Comparisons and [[https://www.genome.gov/10005835/][this website]]. [[http://www.zybooks.com/][Zybooks]]: Review while loops reading from last week; and 3.6, 8.1-8.3. Skip challenge activity 8.3.1. | [[%ATTACHURL%/Lec13CS111Green.pdf][Lec13CS111Green.pdf]] |
| | 10/12 | Dot notation: methods of classes and modules. More files. Discussion of Project 1 | [[https://learn.zybooks.com/zybook/UICCS111Fall2017][Zybooks]]: 2.8 and 2.10. Skip Challenge 2.8.2. | [[%ATTACHURLPATH%/Lec14.pdf][Lec14.pdf]] |
| 8 | 10/16 | Lab: work on project (and lab quiz as usual) | | |
| | 10/17 | CSV files, Modules, random numbers, plotting. Question on Project 1. | <p> [[https://learn.zybooks.com/zybook/UICCS111Fall2017][Zybooks]] 11.1-11.2, 11.7, 12.6-12.7, 15.1-15.2</p> <p> [[https://openstax.org/details/books/concepts-biology][CoB]] 8.1, 8.2</p> | [[%ATTACHURLPATH%/Lect15.pdf][<br />Lect15.pdf]] |
| | 10/19 | <p>Mendelian genetics</p> <p>Nested Loops; list methods</p> | <p> [[https://learn.zybooks.com/zybook/UICCS111Fall2017][Zybooks]] 5.8, 8.2, 8.4, 8.9</p> <p> [[https://openstax.org/details/books/concepts-biology][CoB]] 8.2, 8.3</p> | <p> [[%ATTACHURLPATH%/Lec16_genetics.pdf][<br />Lec16_genetics.pdf]]</p> <p> [[https://www.dropbox.com/sh/pvr6hhaxdhflyaj/AABVzA7BFsGnV3zGQxBzFVrha?dl=0][Prof. Reed's materials]]</p> |
| 9 | 10/23 | Lab: Random numbers, plotting | | |
| | 10/24 | Incremental development, break and continue for while | <p> [[https://learn.zybooks.com/zybook/UICCS111Fall2017][Zybooks]] 5.9-5.10</p> <p> [[https://openstax.org/details/books/concepts-biology][CoB]] 11.1</p> | [[%ATTACHURL%/Lec17CS111GreenFA17Lists.pdf][Lec17CS111GreenFA17Lists.pdf]] |
| | 10/27 | <b>Project 2 out! </b>More about lists and developing functions. | <p> [[https://learn.zybooks.com/zybook/UICCS111Fall2017][Zybooks]] 6.4, 6.7, 6.9-6.11</p> <p> [[https://openstax.org/details/books/concepts-biology][CoB]] 11.2</p> | [[%ATTACHURL%/Lec18CS111GreenFA17.pdf][Lec18CS111GreenFA17.pdf]] [[%ATTACHURL%/CS111GreenLec08Sep2017.pdf][<br />]] |
| 10 | 10/30 | Lab: work on project | | |
| | 10/31 | Scope; difference between immutable and mutable object parameters, while vs. for | [[https://learn.zybooks.com/zybook/UICCS111Fall2017][Zybooks]] 5.7 | [[%ATTACHURL%/Lecture19CS111GreenFA17CS.pdf][Lecture19CS111GreenFA17CS.pdf]] |
| | 11/2 | Exam review | (no new reading, review) | <p> [[%ATTACHURL%/CS111GreenFA17Midterm2Review.pdf][CS111GreenFA17Midterm2Review.pdf]]</p> <p> [[%ATTACHURL%/Bio_review_exam2.pdf][Bio_review_exam2.pdf]]</p> |
| 11 | 11/6 | Lab: (Optional, not quiz.) Exam, project review | | |
| | 11/7 | *Exam #2* | (no new reading, review) | |
| | 11/9 | Program validation, going over exam | | [[%ATTACHURL%/CS111GreenFA17Lect21Nov9.pdf][CS111GreenFA17Lect21Nov9.pdf]] |
| 12 | 11/13 | <p>Lab: No lab quiz; work on project</p> <p> *Project #2 due* </p> | | |
| | 11/14 | String methods, nested lists (brief peek) | [[https://learn.zybooks.com/zybook/UICCS111Fall2017][Zybooks]] 7.3, 8.5. Do also 8.12 if you have the time, but 8.12 isn’t due until at least Thursday. | [[%ATTACHURL%/CS111GreenFA2017Lecture22.pdf][CS111GreenFA2017Lecture22.pdf]] |
| | 11/16 | Dictionaries + fun guest lecture! | [[https://openstax.org/details/books/concepts-biology][CoB]] Ch. 12, [[https://learn.zybooks.com/zybook/UICCS111Fall2017][Zybooks]] 8.5-8.6 | [[%ATTACHURL%/Lecture23CSCS111GreenFA2017Dictionaries.pdf][Lecture23CSCS111GreenFA2017Dictionaries.pdf]] |
| 13 | 11/20 | Lab: Dictionaries, string methods, and the central dogma. (Due Monday night 11/27 because of Thanksgiving) | | |
| | 11/21 | Dictionaries (cont.). Evolution, phylogenetic trees | [[https://openstax.org/details/books/concepts-biology][CoB]] Ch. 12; no new CS reading | [[%ATTACHURL%/treesLect24.pdf][treesLect24.pdf]] |
| 14 | 11/27 | <p><b><i><br /></i></b>Lab quiz</p> <p> *Project 3 out (due 12/8)* </p> | | |
| | 11/28 | Speed (including more on dictionaries) | <a href="https://learn.zybooks.com/zybook/UICCS111Fall2017" target="_blank">Zybooks</a> 8.12, 8.13, 8.14 (if you haven't already done them) | |
| | 11/30 | Guest re: Genenetch summer internships/ CS+Bio careers | | |
| 15 | 12/4 | Review in lab; help with project | | |
| | 12/5 | | | |
| | 12/7 | Review for final | | |
| 16 | 12/15 | *Final exam* | | |
 -- %USERSIG{sloan - 2017-08-24}%

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Attachments

Topic attachments
I	Attachment	Action	Size	Date	Who
pdf	Bio_review_exam2.pdf	manage	7459.9 K	2017-11-03 - 17:54	UnknownUser
pdf	CS111GreenFA17Lect21Nov9.pdf	manage	242.6 K	2017-11-14 - 23:04	UnknownUser
pdf	CS111GreenFA17Midterm2Review.pdf	manage	193.6 K	2017-11-03 - 17:55	UnknownUser
pdf	CS111GreenFA2017Lecture22.pdf	manage	2198.3 K	2017-11-18 - 23:41	UnknownUser
pdf	CS111GreenLec08Sep2017.pdf	manage	1007.3 K	2017-09-24 - 01:22	UnknownUser
pdf	Lec01Green_Introduction.pdf	manage	3511.7 K	2017-08-29 - 19:51	UnknownUser
pdf	Lec02GreenPIandCSandDNA.220ppiPix.pdf	manage	7493.7 K	2017-08-31 - 22:52	UnknownUser
pdf	Lec03Python_sequencing.pdf	manage	6659.0 K	2017-09-05 - 20:22	UnknownUser
pdf	Lec06.pdf	manage	3751.2 K	2017-09-14 - 19:23	UnknownUser
pdf	Lec07.pdf	manage	7003.2 K	2017-09-19 - 20:31	UnknownUser
pdf	Lec11CS111Green.pdf	manage	2248.8 K	2017-10-03 - 20:58	UnknownUser
pdf	Lec12bio.pdf	manage	8428.0 K	2017-10-08 - 21:19	UnknownUser
pdf	Lec12cs.pdf	manage	2298.9 K	2017-10-08 - 21:16	UnknownUser
pdf	Lec13CS111Green.pdf	manage	5620.6 K	2017-10-10 - 20:37	UnknownUser
pdf	Lec14.pdf	manage	816.7 K	2017-10-17 - 04:05	UnknownUser
pdf	Lec16_genetics.pdf	manage	5374.1 K	2017-10-19 - 20:41	UnknownUser
pdf	Lec17CS111GreenFA17Lists.pdf	manage	361.6 K	2017-10-24 - 21:14	UnknownUser
pdf	Lec18CS111GreenFA17.pdf	manage	1771.6 K	2017-10-28 - 18:38	UnknownUser
pdf	Lec9Green-Exam1Review.pdf	manage	1436.1 K	2017-09-26 - 20:05	UnknownUser
pdf	Lect15.pdf	manage	911.7 K	2017-10-18 - 17:56	UnknownUser
pdf	Lecture04.pdf	manage	383.4 K	2017-09-08 - 05:06	UnknownUser
pdf	Lecture19CS111GreenFA17CS.pdf	manage	1073.0 K	2017-11-03 - 17:52	UnknownUser
pdf	Lecture23CSCS111GreenFA2017Dictionaries.pdf	manage	367.4 K	2017-11-18 - 23:41	UnknownUser
pdf	Lecture5Complete.pdf	manage	365.9 K	2017-09-12 - 20:31	UnknownUser
pdf	treesLect24.pdf	manage	8133.2 K	2017-11-21 - 21:09	UnknownUser

Topic revision: r52 - 2017-11-27 - 22:47:53 - Main.sloan

CS111GreenFA17

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