Software links
-
Software to analyze functional correlations between brain regions to identify changes in their structure caused by Attention
Deficit Hyperactivity Disorder (ADHD)
-
Software to "un-gerrymander" a gerrymandered US political districting map via minimizing the efficiency gap measure
-
Link to the software webpage
-
Related papers explaining key concepts:
-
-
Tanima Chatterjee, Bhaskar DasGupta, Laura Palmieri, Zainab Al-Qurashi and Anastasios Sidiropoulos, On theoretical and empirical algorithmic analysis of the efficiency gap measure in partisan gerrymandering, Journal of Combinatorial Optimization, 40(2), 512-546, 2020.
-
Tanima Chatterjee and Bhaskar DasGupta, On partisan bias in redistricting: computational complexity meets the science of gerrymandering, arXiv:1910.01565, 2019.
-
Tanima Chatterjee, Bhaskar DasGupta, Laura Palmieri, Zainab Al-Qurashi and Anastasios Sidiropoulos, Alleviating partisan gerrymandering: can math and computers help to eliminate wasted votes?, arXiv:1804.10577 [cs.CY], 2018.
-
FIN-STAB: an interactive software for shock simulator for financial networks
-
Link to the software webpage
-
Related papers explaining key concepts:
-
-
Piotr Berman, Bhaskar DasGupta, Lakshmi Kaligounder and Marek Karpinski, On the Computational Complexity of Measuring Global Stability of Banking Networks, Algorithmica, 70(4), 595-647, 2014.
-
Bhaskar DasGupta and Lakshmi Kaligounder, On Global Stability of Financial Networks, Journal of Complex Networks, 2 (3), 313-354,2014.
-
DNA-BAR -- Distinguisher Selection for Robust DNA Barcoding
(developed in collaboration with Prof. Ion Mandoiu and his group from University of Connecticut)
-
Link to the software webpage
-
Related papers explaining key concepts:
-
-
Piotr Berman, Bhaskar DasGupta and Ming-Yang Kao,
Tight Approximability Results for Test Set Problems in Bioinformatics,
Journal of Computer & System Sciences,
71 (2), 145-162, 2005.
-
Bhaskar DasGupta, Kishori Konwar, Ion Mandoiu and
Alex Shvartsman,
Highly Scalable Algorithms for Robust String Barcoding,
International Journal of Bioinformatics Research & Applications,
1 (2), 145-161, 2005.
-
Bhaskar DasGupta, Kishori Konwar, Ion Mandoiu and
Alex Shvartsman,
DNA-BAR: Distinguisher Selection for DNA Barcoding,
Bioinformatics,
21 (16), 3424-2426, 2005.
-
Bhaskar DasGupta, Kishori Konwar, Ion Mandoiu and
Alex Shvartsman,
Highly Scalable Algorithms for Robust String Barcoding,
2005 International Workshop on Bioinformatics Research and
Applications
,
LNCS 3515,
Vaidy S. Sunderam, Geert Dick van Albada, Peter M. A. Sloot, et al. (editors),
Springer Verlag,
1020-1028, 2005.
-
NET-SYNTHESIS: Software for synthesis of a biological signal trasduction network
from indirect experimental evidences
-
Link to the software webpage
-
Related papers explaining key concepts:
-
-
Réka Albert, Bhaskar DasGupta and Eduardo Sontag, Inference of signal transduction networks from double causal evidence , Methods in Molecular Biology: Topics in Computational Biology, D. Fenyo (ed.), 673, Chapter 16, © Springer Science+Business Media, LLC, 2010.
-
Réka Albert, Bhaskar DasGupta, Riccardo Dondi and Eduardo Sontag,
Inferring (Biological) Signal Transduction Networks via Transitive Reductions of
Directed Graphs,
Algorithmica.
51 (2), 129-159, 2008.
-
Sema Kachalo, Ranran Zhang, Eduardo Sontag, Réka Albert and
Bhaskar DasGupta,
NET-SYNTHESIS: A software for synthesis, inference and simplification of signal transduction networks
,
Bioinformatics, 24 (2), 293-295, 2008
-
Réka Albert, Bhaskar DasGupta, Riccardo Dondi, Eduardo Sontag, Alexander
Zelikovsky and Kelly Westbrook,
A Novel Method for
Signal Transduction Network Inference from Indirect Experimental Evidence,
Journal of Computational Biology
,
14 (7), 927-949, 2007
(extended abstract in
7th Workshop on Algorithms in Bioinformatics,
R. Giancarlo and S. Hannenhalli (Eds.), LNBI 4645,
Springer-Verlag, 407-419, 2007).